Overview

SNPs are specific locations in the DNA where genetic variations can occur. Every person has a unique composition of variations.

SNP rs1800925 is located on chromosome 5. The most common variation at this position is the C. People with other variations might have letter T instead.

Since humans have each twice (one from each parent), these letter-variations occur on both chromosomes. People can have the same or different letters on both chromosomes. Every person's individual variation assembly is referred to as genotype. For SNP rs1800925 there are 3 currently known genotypes: C/T , C/C or T/T

Genome Browser

This interactive browser visualizes what no human can see with the naked eye - our DNA. From a down to a specific position on a . The position you are looking at here is the exact location of SNP rs1800925. Explore more SNPs and their effects on the body by browsing left and right along the DNA strand.

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Mitochondrial DNAMitochondrial DNA
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Effects relating to rs1800925

Your genetic code influences you in many ways. This may be by either causing you to have a specific trait (eg. Eye colour) or your risk of developing a specific disease.

Each combination of genetic letters (called bases) is called a genotype for this specific SNP. Each Genotype can have a different effect on your body. The table below shows which genotype causes which traits or disease risks.

Current research shows 2 disease risks associated with rs1800925. The following table shows the relationship between genotype and .



Genotype CT

Effect Likelihood Level of evidenceResearch
Elevated serum total IgE
1.73x
Birth order modifies the effect of IL13 gene polymorphisms on serum IgE at age 10 and skin prick test at ages 4, 10 and 18: a prospective birth cohort study

Ogbuanu, Ikechukwu U, Karmaus, Wilfried J, Zhang, Hongmei, Sabo-Attwood, Tara, Ewart, Susan, Roberts, Graham, Arshad, Syed H

Text Extract:

After stratification, the explanatory model showed the effect of rs1800925 on elevated serum total IgE at age 10 to be restricted only to first-born children (p = 0.007; adjusted Prevalence Ratio (PR) = 1.73; 95% CI = 1.16, 2.57)

PMCID: PMCID2874524
Read on PMC
Breast cancer (BC)
2.08x
Genetic variants in genes related to inflammation, apoptosis and autophagy in breast cancer risk (2019)

Schuetz, Johanna M., Grundy, Anne, Lee, Derrick G., Lai, Agnes S., Kobayashi, Lindsay C., Richardson, Harriet, Long, Jirong, Zheng, Wei, Aronson, Kristan J., Spinelli, John J., Brooks-Wilson, Angela R.

Text Extract:

Although no SNP was associated with breast cancer risk among women of European descent, we found evidence for an association among East Asians for rs1800925 (IL-13) and breast cancer risk (OR = 2.08; 95% CI: 1.323.28; p = 0.000779), which remained statistically significant after multiple testing correction (padj = 0.0350)

PMCID: PMCID6314637
Read on PMC
Legend:
Increased probability
Decreased probability
No known effect

Genotype CC

Effect Likelihood Level of evidenceResearch
Elevated serum total IgE
1.00x
Birth order modifies the effect of IL13 gene polymorphisms on serum IgE at age 10 and skin prick test at ages 4, 10 and 18: a prospective birth cohort study

Ogbuanu, Ikechukwu U, Karmaus, Wilfried J, Zhang, Hongmei, Sabo-Attwood, Tara, Ewart, Susan, Roberts, Graham, Arshad, Syed H

Text Extract:

After stratification, the explanatory model showed the effect of rs1800925 on elevated serum total IgE at age 10 to be restricted only to first-born children (p = 0.007; adjusted Prevalence Ratio (PR) = 1.73; 95% CI = 1.16, 2.57)

PMCID: PMCID2874524
Read on PMC
Breast cancer (BC)
1.00x
Genetic variants in genes related to inflammation, apoptosis and autophagy in breast cancer risk (2019)

Schuetz, Johanna M., Grundy, Anne, Lee, Derrick G., Lai, Agnes S., Kobayashi, Lindsay C., Richardson, Harriet, Long, Jirong, Zheng, Wei, Aronson, Kristan J., Spinelli, John J., Brooks-Wilson, Angela R.

Text Extract:

Although no SNP was associated with breast cancer risk among women of European descent, we found evidence for an association among East Asians for rs1800925 (IL-13) and breast cancer risk (OR = 2.08; 95% CI: 1.323.28; p = 0.000779), which remained statistically significant after multiple testing correction (padj = 0.0350)

PMCID: PMCID6314637
Read on PMC
Legend:
Increased probability
Decreased probability
No known effect

Genotype TT

Effect Likelihood Level of evidenceResearch
Elevated serum total IgE
2.46x
Birth order modifies the effect of IL13 gene polymorphisms on serum IgE at age 10 and skin prick test at ages 4, 10 and 18: a prospective birth cohort study

Ogbuanu, Ikechukwu U, Karmaus, Wilfried J, Zhang, Hongmei, Sabo-Attwood, Tara, Ewart, Susan, Roberts, Graham, Arshad, Syed H

Text Extract:

After stratification, the explanatory model showed the effect of rs1800925 on elevated serum total IgE at age 10 to be restricted only to first-born children (p = 0.007; adjusted Prevalence Ratio (PR) = 1.73; 95% CI = 1.16, 2.57)

PMCID: PMCID2874524
Read on PMC
Breast cancer (BC)
3.16x
Genetic variants in genes related to inflammation, apoptosis and autophagy in breast cancer risk (2019)

Schuetz, Johanna M., Grundy, Anne, Lee, Derrick G., Lai, Agnes S., Kobayashi, Lindsay C., Richardson, Harriet, Long, Jirong, Zheng, Wei, Aronson, Kristan J., Spinelli, John J., Brooks-Wilson, Angela R.

Text Extract:

Although no SNP was associated with breast cancer risk among women of European descent, we found evidence for an association among East Asians for rs1800925 (IL-13) and breast cancer risk (OR = 2.08; 95% CI: 1.323.28; p = 0.000779), which remained statistically significant after multiple testing correction (padj = 0.0350)

PMCID: PMCID6314637
Read on PMC
Legend:
Increased probability
Decreased probability
No known effect

Distribution

Knowing your genome can actually tell you a lot about your ancestors.

The prevalence of the different genotypes is based on the native inhabitants of a region. In the map below you see how common each genotype is in the native inhabitants of those regions. Since genetic material is passed down form generation to generation, your DNA shows traces of the geographical origins of your ancestors.

This data is based on “The 1000 Genomes Project” which established one of the most detailed overviews of human genetic variations across the globe. The regions are broadly categorized into five continental groups: Africa, America, Europe, South Asia and East Asia. All continental groups together display the global prevalence. Click through the regions, to learn more about the local prevalence of the possible genotypes.

At present, there is no distribution data available for SNP rs1800925.

Studies and sources

All of the resources below examine SNP rs1800925

Genotype CT

Birth order modifies the effect of IL13 gene polymorphisms on serum IgE at age 10 and skin prick test at ages 4, 10 and 18: a prospective birth cohort study

Ogbuanu, Ikechukwu U, Karmaus, Wilfried J, Zhang, Hongmei, Sabo-Attwood, Tara, Ewart, Susan, Roberts, Graham, Arshad, Syed H

PMCID: PMCID2874524
Genetic variants in genes related to inflammation, apoptosis and autophagy in breast cancer risk (2019)

Schuetz, Johanna M., Grundy, Anne, Lee, Derrick G., Lai, Agnes S., Kobayashi, Lindsay C., Richardson, Harriet, Long, Jirong, Zheng, Wei, Aronson, Kristan J., Spinelli, John J., Brooks-Wilson, Angela R.

PMCID: PMCID6314637

Genotype CC

Birth order modifies the effect of IL13 gene polymorphisms on serum IgE at age 10 and skin prick test at ages 4, 10 and 18: a prospective birth cohort study

Ogbuanu, Ikechukwu U, Karmaus, Wilfried J, Zhang, Hongmei, Sabo-Attwood, Tara, Ewart, Susan, Roberts, Graham, Arshad, Syed H

PMCID: PMCID2874524
Genetic variants in genes related to inflammation, apoptosis and autophagy in breast cancer risk (2019)

Schuetz, Johanna M., Grundy, Anne, Lee, Derrick G., Lai, Agnes S., Kobayashi, Lindsay C., Richardson, Harriet, Long, Jirong, Zheng, Wei, Aronson, Kristan J., Spinelli, John J., Brooks-Wilson, Angela R.

PMCID: PMCID6314637

Genotype TT

Birth order modifies the effect of IL13 gene polymorphisms on serum IgE at age 10 and skin prick test at ages 4, 10 and 18: a prospective birth cohort study

Ogbuanu, Ikechukwu U, Karmaus, Wilfried J, Zhang, Hongmei, Sabo-Attwood, Tara, Ewart, Susan, Roberts, Graham, Arshad, Syed H

PMCID: PMCID2874524
Genetic variants in genes related to inflammation, apoptosis and autophagy in breast cancer risk (2019)

Schuetz, Johanna M., Grundy, Anne, Lee, Derrick G., Lai, Agnes S., Kobayashi, Lindsay C., Richardson, Harriet, Long, Jirong, Zheng, Wei, Aronson, Kristan J., Spinelli, John J., Brooks-Wilson, Angela R.

PMCID: PMCID6314637